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Molecular tests utilize nucleic
acid amplification technologies to amplify a DNA or RNA template
from a few copies to billions of copies in a short period of time,
allowing highly sensitive and specific detection of the targeting
organisms. Traditionally,
molecular testing is performed using Polymerase Chain Reaction (PCR)
technology, which is aided by the heat-stable Taq DNA polymerase
or similar enzymes. The purified DNA template is heated to
denature, allowing two or more primers to bind and extend when the
reaction mixture is cooled. This thermal cycling process is
repeated many times; the template is amplified exponentially to be
detected using a variety of methods, including electrophoresis,
fluorescent dyes specifically binding to double stranded DNA, and
oligo-probes associated with a variety of fluorescent dyes and
quenchers. RNA cannot be amplified by PCR without a separate
step of reverse-transcription first.
Loop-mediated Isothermal Amplification (LAMP*) is a
single temperature, strand displacement amplification using four
different primers recognizing six distinct regions of the target,
making it highly specific. LAMP uses efficient Bst DNA polymerase,
amplifying target nucleotides 109
- 1010 times in 15 to 60 minutes, resulting in high sensitivity. Any
verified commercial purification kits or laboratory method, some as
simple as a heat extraction, can be used to extract DNA or
RNA. The test results can be read in real-time using a simple,
economical turbidimeter with easy- to-use software, or at the
endpoint with an indicative dye using a basic heat block.
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